Selected Recent Publications
Cancer treatment alters mutant selection in normal esophagus
Joanna C. Fowler, Giuseppina Arbore, Roshan K. Sood, Irina Abnizova, Luca Albarello, Oliver Pickering, Kasumi Murai, Ujjwal Banerjee, Salomé Brunon, Swee Hoe Ong, Andrea Cossu, Ugo Elmore, Francesco Puccetti, David Fernandez-Antoran, Giovanni Tonon, Paolo Dellabona, Riccardo Rosati, Samuel Luke Hill, Tim Underwood, Benjamin A. Hall*, David Shorthouse & Philip H. Jones. Nature Genetics 2026
Large-scale computational modelling of the M1 and M2 synovial macrophages in rheumatoid arthritis
Naouel Zerrouk, Rachel Alcraft, Benjamin A Hall, Franck Augé, Anna Niarakis. npj Systems Biology and Applications 2024
KCNQ potassium channels modulate WNT activity in gastro-oesophageal adenocarcinomas
David Shorthouse, Lizhe Zhuang, Eric P Rahrmann, Cassandra Kosmidou, Katherine Wickham Rahrmann, Michael Hall, Benedict Greenwood, Ginny Devonshire, Richard J Gilbertson, Rebecca C. Fitzgerald, Benjamin A Hall. Life Sciences Alliance 2023
SMAD4 and KCNQ3 alterations are associated with lymph node metastases in oesophageal adenocarcinoma
Kieran Foley, David Shorthouse, Eric Rahrmann, L Zhuang, G Devonshire, RJ Gilbertson; OCCAMS consortium; Rebecca C Fitzgerald, Benjamin A Hall. Biochim Biophys Acta Mol Basis Dis. 2023
Mutations observed in somatic evolution reveal underlying gene mechanisms
Michael W. J. Hall, David Shorthouse, Rachel Alcraft, Philip H. Jones & Benjamin A. Hall. Communications Biology 2023
Selected Preprints
Dynamics of the B-Cell gene regulatory network in differentiation determine evolutionary trajectories of childhood leukaemogenesis
Matthieu Bouguéon, Jason Wray, Tariq Enver, Benjamin A Hall, bioRxiv
Validating folding energy estimates as a method for variant interpretation
Clementine Elwes, Rachel Alcraft, Harris Lister, Paul Smith, David Shorthouse, Benjamin A Hall, bioRxiv
Somatic mutant selection is altered by prior NOTCH1 mutation in aging esophageal epithelium
Charlotte King, Joanna C Fowler, Emilie Abby, Kasumi Murai, Roshan K Sood, Irina Abnizova, Salomé Brunon, Swee Hoe Ong, Faye Lynch Williams, Michael W J Hall, Benjamin A Hall, Philip H Jones, bioRxiv
Reviews and book chapters
Data integration in logic-based models of biological mechanisms.
Benjamin A Hall and Anna Niaraki. Current Opinion In Systems Biology (2021)
Cellular survival over genomic perfection.
S Nik-Zainal, Benjamin A Hall, Science (2019)
Bacterial Chemotaxis
Kathryn A Scott, Elizabeth E Jefferys, Benjamin A Hall, Mark AJ Roberts, Judith P Armitage. Bacterial Regulatory Networks (2012)